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.gitattributes

@@ -33,3 +33,4 @@ saved_model/**/* filter=lfs diff=lfs merge=lfs -text
 *.zip filter=lfs diff=lfs merge=lfs -text
 *.zst filter=lfs diff=lfs merge=lfs -text
 *tfevents* filter=lfs diff=lfs merge=lfs -text
+OnClass.data-00000-of-00001 filter=lfs diff=lfs merge=lfs -text

OnClass.data-00000-of-00001

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OnClass.npz

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accuracies.json

@@ -0,0 +1,4 @@
+{
+    "query_accuracy": "| Cell Type | N cells |  celltypist |  knn bbknn |  knn harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| kidney collecting duct epithelial cell | 32 | 0.95 | 0.76 | 0.95 | 0.49 | 0.00 | 0.70 | 0.98 | 0.98 | 1.00 |\n| epithelial cell of proximal tubule | 37 | 0.93 | 0.95 | 0.87 | 0.35 | 0.00 | 0.10 | 0.96 | 0.97 | 1.00 |\n| kidney collecting duct principal cell | 8 | 0.63 | 0.46 | 0.71 | 0.36 | 0.00 | 0.33 | 1.00 | 0.89 | 0.94 |\n| macrophage | 13 | 0.92 | 0.89 | 0.96 | 0.48 | 0.00 | 0.92 | 1.00 | 1.00 | 1.00 |\n| kidney loop of Henle ascending limb epithelial cell | 12 | 0.70 | 0.74 | 0.85 | 0.61 | 0.00 | 0.74 | 1.00 | 1.00 | 0.96 |\n| mesangial cell | 12 | 0.54 | 0.88 | 0.77 | 0.50 | 0.00 | 0.43 | 0.59 | 0.54 | 0.60 |\n| B cell | 2 | 0.67 | 0.67 | 0.80 | 0.00 | 0.00 | 0.00 | 1.00 | 1.00 | 1.00 |\n| T cell | 9 | 0.95 | 1.00 | 0.95 | 0.43 | 0.00 | 0.51 | 1.00 | 1.00 | 1.00 |\n| kidney interstitial fibroblast | 3 | 0.80 | 0.80 | 0.80 | 0.00 | 0.00 | 0.20 | 0.50 | 0.80 | 0.80 |",
+    "ref_accuracy": "| Cell Type | N cells |  celltypist |  knn bbknn |  knn harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| kidney collecting duct epithelial cell | 400 | 0.95 | 0.76 | 0.94 | 0.86 | 0.00 | 0.70 | 1.00 | 1.00 | 0.99 |\n| epithelial cell of proximal tubule | 351 | 0.94 | 0.93 | 0.79 | 0.81 | 0.00 | 0.02 | 0.97 | 1.00 | 0.99 |\n| kidney collecting duct principal cell | 145 | 0.87 | 0.74 | 0.84 | 0.69 | 0.00 | 0.41 | 1.00 | 0.99 | 0.98 |\n| macrophage | 137 | 0.96 | 0.99 | 0.98 | 0.61 | 0.00 | 0.94 | 1.00 | 1.00 | 1.00 |\n| kidney loop of Henle ascending limb epithelial cell | 131 | 0.84 | 0.78 | 0.87 | 0.69 | 0.00 | 0.57 | 1.00 | 1.00 | 0.97 |\n| mesangial cell | 79 | 0.36 | 0.86 | 0.62 | 0.54 | 0.00 | 0.26 | 0.42 | 0.40 | 0.40 |\n| B cell | 78 | 0.92 | 0.96 | 0.91 | 0.56 | 0.00 | 0.31 | 1.00 | 0.97 | 0.99 |\n| T cell | 70 | 0.98 | 0.78 | 0.80 | 0.35 | 0.00 | 0.33 | 1.00 | 1.00 | 0.94 |\n| kidney interstitial fibroblast | 13 | 1.00 | 1.00 | 0.70 | 0.80 | 0.00 | 0.31 | 1.00 | 1.00 | 1.00 |"
+}

celltypist.pkl

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checkpoint

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harmony_knn_classifier.joblib

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obo_dag.joblib

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popv_output/predictions.csv

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